prototype implementation of i2b2 server emulation

.settings/

.classpath

.project

target/

Dependencies

------------

For development/testing, the server can be started with

`mvn -P jetty jetty:run-war`. This functionality needs i2b2 webclient. 

You may need to download the webclient from i2b2.org/software and 

install the bundle into your local maven repository manually via

```

 mvn install:install-file -Dfile=i2b2webclient-1707c.zip -DgroupId=org.i2b2 -DartifactId=webclient -Dversion=1.7.07c -Dpackaging=zip

```

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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"

	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">

	<modelVersion>4.0.0</modelVersion>

	<name>HIStream : i2b2 server emulation</name>

	<packaging>war</packaging>

	<description>

	This project emulates the core components

	of an i2b2 server backend. Basic functionality

	of PM, CRC, ONT and WORK cells allows the

	official i2b2 webclient to connect ot this

	emulated server.

	</description>

	<groupId>de.sekmi.histream</groupId>

	<artifactId>i2b2-server</artifactId>

	<version>0.8-SNAPSHOT</version>

	<parent>

		<groupId>de.sekmi.histream</groupId>

		<artifactId>histream</artifactId>

		<version>0.8-SNAPSHOT</version>

	</parent>

	<profiles>

		<profile>

			<id>jetty</id>

			<build>

				<plugins>

					<plugin>

						<groupId>org.eclipse.jetty</groupId>

						<artifactId>jetty-maven-plugin</artifactId>

						<!--<version>9.3.10.v20160621</version> -->

						<version>9.3.8.v20160314</version>

						<configuration>

							<useTestScope>true</useTestScope>

							<useProvidedScope>true</useProvidedScope>

							<scanIntervalSeconds>5</scanIntervalSeconds>

							<contextXml>${project.basedir}/src/main/webapp/WEB-INF/jetty-context.xml</contextXml>

							<webApp>

								<descriptor>${project.basedir}/src/main/webapp/WEB-INF/jetty-defaults-web.xml</descriptor>

								<jettyEnvXml>${project.basedir}/src/main/webapp/WEB-INF/jetty-env.xml</jettyEnvXml>

							</webApp>

						</configuration>

						<dependencies>

							<!-- jackson json media filters -->

							<dependency>

								<groupId>org.glassfish.jersey.media</groupId>

								<artifactId>jersey-media-json-jackson</artifactId>

								<version>2.14</version>

							</dependency>

						</dependencies>

					</plugin>

					<plugin>

						<groupId>org.apache.maven.plugins</groupId>

						<artifactId>maven-dependency-plugin</artifactId>

						<version>2.10</version>

						<executions>

							<execution>

								<id>unpack</id>

								<phase>generate-resources</phase>

								<goals>

									<goal>unpack</goal>

								</goals>

								<configuration>

									<artifactItems>

										<!-- this is a non-standard dependency for executing jetty:run-war. 

											See README.md for instructions. -->

										<artifactItem>

											<groupId>org.i2b2</groupId>

											<artifactId>webclient</artifactId>

											<version>1.7.07c</version>

											<type>zip</type>

										</artifactItem>

									</artifactItems>

									<outputDirectory>${project.build.directory}/classes</outputDirectory>

								</configuration>

							</execution>

						</executions>

					</plugin>

				</plugins>

			</build>

			<dependencies>

				<!-- jetty:run dependencies (cannot be moved to plugin/dependencies because 

					of errors) -->

				<dependency>

					<groupId>org.glassfish.jersey.containers</groupId>

					<artifactId>jersey-container-servlet</artifactId>

					<version>2.14</version>

					<scope>provided</scope>

				</dependency>

				<dependency>

					<groupId>org.glassfish.jersey.containers.glassfish</groupId>

					<artifactId>jersey-gf-cdi</artifactId>

					<version>2.14</version>

					<scope>provided</scope>

				</dependency>

				<dependency>

					<groupId>org.glassfish.jersey.containers.glassfish</groupId>

					<artifactId>jersey-gf-cdi-ban-custom-hk2-binding</artifactId>

					<version>2.14</version>

					<scope>provided</scope>

				</dependency>

				<!-- CDI integration -->

				<dependency>

					<groupId>org.jboss.weld.servlet</groupId>

					<artifactId>weld-servlet-core</artifactId>

					<version>2.2.5.Final</version>

					<scope>provided</scope>

				</dependency>

			</dependencies>

		</profile>

	</profiles>

	<build>

		<resources>

			<resource>

				<directory>src/main/resources</directory>

			</resource>

			<resource>

				<directory>target/generated-resources</directory>

			</resource>

		</resources>

		<plugins>

		</plugins>

	</build>

	<dependencies>

		<dependency>

			<groupId>javax.ws.rs</groupId>

			<artifactId>javax.ws.rs-api</artifactId>

			<version>2.0.1</version>

			<scope>provided</scope>

		</dependency>

		<dependency>

			<groupId>javax.inject</groupId>

			<artifactId>javax.inject</artifactId>

			<version>1</version>

			<scope>provided</scope>

		</dependency>

		<dependency>

			<groupId>javax.annotation</groupId>

			<artifactId>javax.annotation-api</artifactId>

			<version>1.2</version>

			<scope>provided</scope>

		</dependency>

		<!-- template processing -->

		<dependency>

			<groupId>org.freemarker</groupId>

			<artifactId>freemarker</artifactId>

			<version>2.3.23</version>

		</dependency>

		<dependency>

			<groupId>junit</groupId>

			<artifactId>junit</artifactId>

		</dependency>

	</dependencies>

</project>

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package de.sekmi.histream.i2b2.api.crc;

import java.util.List;

public interface QueryInstance {

	String getId(); // instance id

	QueryStatus getStatus();

	List<QueryResult> getResults();

}

package de.sekmi.histream.i2b2.api.crc;

import java.util.List;

import org.w3c.dom.Element;

public interface QueryManager {

	QueryMaster runQuery(Element definition, List<ResultType> results);

	QueryMaster getQuery(String queryId);

	/**

	 * List queries for user

	 * @param userId user id

	 * @return queries

	 */

	Iterable<QueryMaster> listQueries(String userId);

	/**

	 * Return supported result types

	 * @return result types

	 */

	Iterable<ResultType> getResultTypes();

}