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Raphael
histream
Commits
e5be0fb5
Commit
e5be0fb5
authored
Aug 05, 2015
by
R.W.Majeed
Browse files
concepts are loaded for patient+visit tables
parent
4abdb076
Changes
4
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histream-import/src/main/java/de/sekmi/histream/etl/PatientRow.java
View file @
e5be0fb5
package
de.sekmi.histream.etl
;
import
java.util.ArrayList
;
import
java.util.List
;
import
de.sekmi.histream.Observation
;
...
...
@@ -16,18 +17,19 @@ public class PatientRow extends PatientImpl implements FactRow{
String
firstname
;
String
lastname
;
// TODO concepts
List
<
Observation
>
facts
;
public
void
setNames
(
String
first
,
String
last
){
this
.
firstname
=
first
;
this
.
lastname
=
last
;
this
.
facts
=
new
ArrayList
<>();
}
@Override
public
List
<
Observation
>
getFacts
()
{
// TODO Auto-generated method stub
return
null
;
return
facts
;
}
...
...
histream-import/src/main/java/de/sekmi/histream/etl/VisitRow.java
View file @
e5be0fb5
package
de.sekmi.histream.etl
;
import
java.util.ArrayList
;
import
java.util.List
;
import
de.sekmi.histream.Observation
;
import
de.sekmi.histream.impl.VisitImpl
;
public
class
VisitRow
extends
VisitImpl
implements
FactRow
{
List
<
Observation
>
facts
;
public
VisitRow
(){
facts
=
new
ArrayList
<>();
}
@Override
public
List
<
Observation
>
getFacts
()
{
// TODO Auto-generated method stub
return
null
;
return
facts
;
}
@Override
...
...
histream-import/src/main/java/de/sekmi/histream/etl/config/PatientTable.java
View file @
e5be0fb5
...
...
@@ -6,6 +6,7 @@ import javax.xml.bind.annotation.XmlAccessorType;
import
javax.xml.bind.annotation.XmlElement
;
import
javax.xml.bind.annotation.XmlElementWrapper
;
import
de.sekmi.histream.Observation
;
import
de.sekmi.histream.ObservationFactory
;
import
de.sekmi.histream.etl.ColumnMap
;
import
de.sekmi.histream.etl.ConceptTable
;
...
...
@@ -58,7 +59,13 @@ public class PatientTable extends Table<PatientRow> implements ConceptTable{
patient
.
setNames
(
idat
.
firstname
.
valueOf
(
map
,
row
),
idat
.
surname
.
valueOf
(
map
,
row
));
patient
.
setBirthDate
(
idat
.
birthdate
.
valueOf
(
map
,
row
));
patient
.
setDeathDate
(
idat
.
deathdate
.
valueOf
(
map
,
row
));
// TODO concepts
// concepts
if
(
concepts
!=
null
){
for
(
Concept
c
:
concepts
){
Observation
o
=
c
.
createObservation
(
patient
.
getPatientId
(),
null
,
factory
,
map
,
row
);
patient
.
getFacts
().
add
(
o
);
}
}
return
patient
;
}
...
...
histream-import/src/main/java/de/sekmi/histream/etl/config/VisitTable.java
View file @
e5be0fb5
...
...
@@ -6,6 +6,7 @@ import javax.xml.bind.annotation.XmlElement;
import
javax.xml.bind.annotation.XmlElementWrapper
;
import
javax.xml.bind.annotation.XmlType
;
import
de.sekmi.histream.Observation
;
import
de.sekmi.histream.ObservationFactory
;
import
de.sekmi.histream.etl.ColumnMap
;
import
de.sekmi.histream.etl.ConceptTable
;
...
...
@@ -53,7 +54,14 @@ public class VisitTable extends Table<VisitRow> implements ConceptTable{
visit
.
setStartTime
(
idat
.
start
.
valueOf
(
map
,
row
));
visit
.
setEndTime
(
idat
.
end
.
valueOf
(
map
,
row
));
// TODO other
// TODO concepts
// concepts
if
(
concepts
!=
null
){
for
(
Concept
c
:
concepts
){
Observation
o
=
c
.
createObservation
(
visit
.
getPatientId
(),
visit
.
getId
(),
factory
,
map
,
row
);
visit
.
getFacts
().
add
(
o
);
}
}
return
visit
;
}
...
...
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