Commit 09e05a6d by Philip Rinn

### Remove calls to Rcpp:::CxxFlags() and Rcpp:::LdFlags()

parent 898b53f2
 2019-01-02 Philip Rinn * Tag as version 1.2.1 * Remove calls to Rcpp:::CxxFlags() and Rcpp:::LdFlags() 2017-07-20 Philip Rinn * Add package registration code ... ...
 Package: Langevin Type: Package Title: Langevin Analysis in One and Two Dimensions Version: 1.2 Date: 2016-08-29 Version: 1.2.1 Date: 2019-01-02 Authors@R: c(person('Philip', 'Rinn', email='philip.rinn@uni-oldenburg.de', role=c('aut','cre')), person('Pedro G.', 'Lind', role='aut'), person('David', 'Bastine', role='ctb')) ... ... @@ -20,4 +20,4 @@ Depends: Imports: Rcpp (>= 0.11.0) LinkingTo: Rcpp, RcppArmadillo (>= 0.4.600.0) RoxygenNote: 6.0.1 RoxygenNote: 6.1.1
 ... ... @@ -4,8 +4,8 @@ \alias{Langevin1D} \title{Calculate the Drift and Diffusion of one-dimensional stochastic processes} \usage{ Langevin1D(data, bins, steps, sf = ifelse(is.ts(data), frequency(data), 1), bin_min = 100, reqThreads = -1) Langevin1D(data, bins, steps, sf = ifelse(is.ts(data), frequency(data), 1), bin_min = 100, reqThreads = -1) } \arguments{ \item{data}{a vector containing the time series or a time-series object.} ... ...
 ... ... @@ -4,8 +4,8 @@ \alias{Langevin2D} \title{Calculate the Drift and Diffusion of two-dimensional stochastic processes} \usage{ Langevin2D(data, bins, steps, sf = ifelse(is.mts(data), frequency(data), 1), bin_min = 100, reqThreads = -1) Langevin2D(data, bins, steps, sf = ifelse(is.mts(data), frequency(data), 1), bin_min = 100, reqThreads = -1) } \arguments{ \item{data}{a matrix containing the time series as columns or a time-series ... ...
 ... ... @@ -4,7 +4,8 @@ \alias{print.Langevin} \title{Print estimated drift and diffusion coefficients} \usage{ \method{print}{Langevin}(x, digits = max(3, getOption("digits") - 3), ...) \method{print}{Langevin}(x, digits = max(3, getOption("digits") - 3), ...) } \arguments{ \item{x}{an object of class "Langevin".} ... ...
 ... ... @@ -4,8 +4,8 @@ \alias{summary.Langevin} \title{Summarize estimated drift and diffusion coefficients} \usage{ \method{summary}{Langevin}(object, ..., digits = max(3, getOption("digits") - 3)) \method{summary}{Langevin}(object, ..., digits = max(3, getOption("digits") - 3)) } \arguments{ \item{object}{an object of class "Langevin".} ... ...
 ... ... @@ -4,8 +4,8 @@ \alias{timeseries1D} \title{Generate a 1D Langevin process} \usage{ timeseries1D(N, startpoint = 0, d13 = 0, d12 = 0, d11 = -1, d10 = 0, d22 = 0, d21 = 0, d20 = 1, sf = 1000, dt = 0) timeseries1D(N, startpoint = 0, d13 = 0, d12 = 0, d11 = -1, d10 = 0, d22 = 0, d21 = 0, d20 = 1, sf = 1000, dt = 0) } \arguments{ \item{N}{a scalar denoting the length of the time-series to generate.} ... ...
 ... ... @@ -4,12 +4,13 @@ \alias{timeseries2D} \title{Generate a 2D Langevin process} \usage{ timeseries2D(N, startpointx = 0, startpointy = 0, D1_1 = matrix(c(0, -1, rep(0, 14)), nrow = 4), D1_2 = matrix(c(0, 0, 0, 0, -1, rep(0, 11)), nrow = 4), g_11 = matrix(c(1, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), g_12 = matrix(c(0, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), g_21 = matrix(c(0, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), g_22 = matrix(c(1, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), sf = 1000, dt = 0) timeseries2D(N, startpointx = 0, startpointy = 0, D1_1 = matrix(c(0, -1, rep(0, 14)), nrow = 4), D1_2 = matrix(c(0, 0, 0, 0, -1, rep(0, 11)), nrow = 4), g_11 = matrix(c(1, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), g_12 = matrix(c(0, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), g_21 = matrix(c(0, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), g_22 = matrix(c(1, 0, 0, 0, 0, 0, 0, 0, 0), nrow = 3), sf = 1000, dt = 0) } \arguments{ \item{N}{a scalar denoting the length of the time-series to generate.} ... ...
 ## Use the R_HOME indirection to support installations of multiple R version PKG_CXXFLAGS = $(R_HOME)/bin/Rscript -e "Rcpp:::CxxFlags()"$(SHLIB_OPENMP_CXXFLAGS) PKG_LIBS = $(R_HOME)/bin/Rscript -e "Rcpp:::LdFlags()"$(LAPACK_LIBS) $(BLAS_LIBS)$(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) ## With R 3.1.0 or later, you can uncomment the following line to tell R to ## enable compilation with C++11 (where available) ## ## Also, OpenMP support in Armadillo prefers C++11 support. However, for wider ## availability of the package we do not yet enforce this here. It is however ## recommended for client packages to set it. ## ## And with R 3.4.0, and RcppArmadillo 0.7.960.*, we turn C++11 on as OpenMP ## support within Armadillo prefers / requires it CXX_STD = CXX11 PKG_CXXFLAGS =$(SHLIB_OPENMP_CXXFLAGS) PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS)$(LAPACK_LIBS) $(BLAS_LIBS)$(FLIBS)
 ## Use the R_HOME indirection to support installations of multiple R version PKG_CXXFLAGS = $(shell$(R_HOME)/bin/Rscript.exe -e "Rcpp:::CxxFlags()") $(SHLIB_OPENMP_CXXFLAGS) PKG_LIBS =$(shell $(R_HOME)/bin/Rscript.exe -e "Rcpp:::LdFlags()")$(LAPACK_LIBS) $(BLAS_LIBS)$(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) ## With R 3.1.0 or later, you can uncomment the following line to tell R to ## enable compilation with C++11 (where available) ## ## Also, OpenMP support in Armadillo prefers C++11 support. However, for wider ## availability of the package we do not yet enforce this here. It is however ## recommended for client packages to set it. ## ## And with R 3.4.0, and RcppArmadillo 0.7.960.*, we turn C++11 on as OpenMP ## support within Armadillo prefers / requires it CXX_STD = CXX11 PKG_CXXFLAGS =$(SHLIB_OPENMP_CXXFLAGS) PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS)$(LAPACK_LIBS) $(BLAS_LIBS)$(FLIBS)
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