Commit d00b7842 authored by Jannes Höpke's avatar Jannes Höpke

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parent 4c824c86
#nexus
begin trees;
translate
1 Plantago_uniflora,
2 Plantago_rigida,
3 Plantago_major,
4 Plantago_camtschatica,
5 Plantago_rugelii,
6 Plantago_media,
7 Plantago_stauntonii,
8 Plantago_amplexicaulis,
9 Plantago_webbii,
10 Plantago_mauretanica,
11 Plantago_arenaria,
12 Plantago_afra,
13 Plantago_brasiliensis,
14 Plantago_erecta,
15 Plantago_aristata,
16 Plantago_patagonica,
17 Plantago_cretica,
18 Plantago_lagopus,
19 AY101949_P_atrata_Kaukasus,
20 DCA_1031_P_cafra_South_Africa,
21 DCA_1406_P_cafra_South_Africa,
22 DCA_1405_P_cafra_South_Africa,
23 DCA_1032_P_cafra_South_Africa,
24 DCA_1402_P_crassifolia_Greece,
25 AY101950_P_nivalis_Spain,
26 AY101952_P_lanceolata_unknown,
27 AY101932_P_alpina_unknown,
28 AY101934_P_maritima_unknown,
29 DCA_1397_P_maritima_Russia,
30 AY101933_P_subulata_unknown,
31 DCA_1399_P_subulata_Spain,
32 DCA_1024_P_crassifolia_South_Africa,
33 DCA_1025_P_crassifolia_South_Africa,
34 DCA_1026_P_crassifolia_South_Africa,
35 DCA_1027_P_crassifolia_South_Africa,
36 DCA_1029_P_crassifolia_South_Africa,
37 DCA_1030_P_crassifolia_South_Africa,
38 DCA_1038_P_crassifolia_South_Africa,
39 DCA_1396_P_crassifolia_South_Africa,
40 AF486419_P_coronopus_England,
41 AY101936_P_crassifolia_Spain,
42 DCA_1033_P_coronopus_South_Africa,
43 AY101937_P_coronopus_Denmark,
44 DCA_1424_P_coronopus_Italy,
45 DCA_1430_P_coronopus_Malta,
46 DCA_1431_P_coronopus_Iran,
47 DCA_1432_P_coronopus_Spain,
48 DCA_1433_P_coronopus_Kuwait,
49 DCA_1436_P_coronopus_Bahrain,
50 DCA_1438_P_coronopus_Montenegro,
51 DCA_1390_P_coronopus_Algeria,
52 DCA_1391_P_coronopus_Algeria,
53 DCA_1392_P_coronpus_Morocco,
54 DCA_1395_P_coronopus_Tunisia,
55 DCA_1097_P_coronopus_Turkey,
56 DCA_1394_P_coronopus_Spain,
57 DCA_1036_P_coronopus_South_Africa,
58 DCA_1407_P_coronopus_Spain,
59 AY101938_P_macrorhiza_unknown,
60 AY101935_P_serraria_unknown,
61 DCA_1425_P_serraria_Italy,
62 AY101939_P_subspathulata_Portugal,
63 1470,
64 1471,
65 1473,
66 DCA_1416_P_serraria_Italy,
67 DCA_1422_P_crypsoides_Saudi_Arabia,
68 DCA_1403_P_crassifolia_Spain;
tree best = [&U][-3194.7174][ r 0.92789282 1.0473331 0.52995883 0.58384442 1.5916046 b 0.34757644 0.16395479 0.17603732 0.31243146 a 0.88855238 p 0.13275045 ](59:0.00000001,(((53:0.00000001,(50:0.00000001,(47:0.00000001,43:0.00000001):0.00000001):0.00000001):0.00000001,(56:0.00000001,(58:0.00000001,40:0.00629851):0.00000001):0.00000001):0.00125338,(62:0.00000001,((((64:0.00000001,((55:0.00000001,57:0.00000001):0.00000001,42:0.00000001):0.00000001):0.00125042,52:0.00000001):0.00000001,(((((((((4:0.00187573,(7:0.00123892,5:0.00000001):0.00120710):0.00186029,2:0.00251650):0.00120564,3:0.00369783):0.00119070,6:0.00248040):0.01876748,(1:0.03100605,(((8:0.01617041,((22:0.00000001,(21:0.00000001,(20:0.00144572,23:0.00000001):0.00000001):0.00000001):0.00247139,(19:0.00144965,25:0.00276335):0.00338767):0.01182718):0.00000001,(18:0.00517297,26:0.00374590):0.00773570):0.01179186,((11:0.00393343,((12:0.01274465,10:0.00126960):0.00000001,9:0.00000001):0.00166677):0.01957639,(17:0.03111056,(13:0.00000001,(14:0.00827210,(16:0.00000001,15:0.00000001):0.00463838):0.00171410):0.01902516):0.01209279):0.00085293):0.01383749):0.00837479):0.00959805,((28:0.00123832,(27:0.00000001,(31:0.00244480,30:0.00610501):0.00000001):0.00000001):0.00000001,29:0.00243863):0.01205808):0.01195300,(((35:0.00000001,(((34:0.00000001,36:0.00000001):0.00000001,(39:0.00000001,38:0.00000001):0.00000001):0.00000001,33:0.00000001):0.00000001):0.00124577,(63:0.00000001,32:0.00000001):0.00125027):0.00000001,(37:0.00266874,65:0.00249745):0.00000001):0.00000001):0.00309172,((((49:0.00719828,24:0.00297892):0.00000001,((46:0.00000001,41:0.00000001):0.00000001,(48:0.00000001,(((61:0.00000001,60:0.00000001):0.00000001,66:0.00207266):0.00000001,45:0.00000001):0.00125060):0.00125104):0.00000001):0.00000001,67:0.00000001):0.00186090,68:0.00067352):0.00379625):0.00830052,44:0.00157524):0.00000001):0.00125305,51:0.00000001):0.00000001):0.00000001):0.00125341,54:0.00000001);
end;
begin paup;
clear;
gett file=PlantagotrnLF.best.tre storebr;
lset userbr nst=6 rmat=(0.92789282 1.04733305 0.52995883 0.58384442 1.59160463) base=(0.34757644 0.16395479 0.17603732) rates=gamma shape= 0.88855238 ncat=4 pinv= 0.13275045;
end;
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