Commit 89329abc authored by Jannes Höpke's avatar Jannes Höpke

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parent 92ca74d6
#NEXUS
[
=============
Summary Trees
=============
Summary trees generated by SumTrees.
Summarization Information
-------------------------
Trees read from 1 source(s):
- 'PlantagoITS.boot.tre'
Total of 1000 trees analyzed for summarization:
- All trees were treated as unweighted
- All trees were unrooted
- 82 unique taxa across all trees
- 7757 unique splits out of a total of 162000 splits
- 7674 unique non-trivial splits counted out of a total of non-trivial 79000 splits
Summarized onto consensus tree with minimum clade frequency threshold of 0.5:
- Target tree(s) rotated to set outgroup: 'Plantago uniflora'
- Support values expressed as percentages
- Edge lengths on target trees set to mean of edge lengths in sources
- Support and other summarization annotations added to target trees as metadata
Program Information
-------------------
SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder
Using None, located at: '/home/jannes/Additional_applications/miniconda2/envs/py3-sumtrees/lib/python3.4/site-packages/DendroPy-4.0.3-py3.4.egg/dendropy'
Running under Python 3.4.5 |Continuum Analytics, Inc.| (default, Jul 2 2016, 17:47:47) (GCC 4.4.7 20120313 (Red Hat 4.4.7-1)), located at: '/home/jannes/Additional_applications/miniconda2/envs/py3-sumtrees/bin/python'
Execution Information
---------------------
Executed on jannes-pc by jannes@jannes-pc
Working directory: '/home/jannes/Desktop/Plantago'
Started at: 2019-02-25 14:33:34.373243
Ended at: 2019-02-25 14:33:44.429611
Total elapsed time: 10.056368 seconds
Actual analysis time: 9.803266 seconds
Citation Information
--------------------
Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for
phylogenetic computing. Bioinformatics 26: 1569-1571.
Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree
Summarization. 4.0.0 (Jan 31 2015). Available at
https://github.com/jeetsukumaran/DendroPy.
]
BEGIN TAXA;
DIMENSIONS NTAX=82;
TAXLABELS
Plantago_uniflora
Plantago_rigida_new_48
Plantago_major
Plantago_camtschatica
Plantago_rugelii
Plantago_media
Plantago_stauntonii
Plantago_amplexicaulis
Plantago_webbii
Plantago_mauretanica
Plantago_arenaria
Plantago_afra
Plantago_brasiliensis
Plantago_erecta
Plantago_aristata
Plantago_patagonica
Plantago_cretica
Plantago_lagopus
AY101895_P_atrata_Kaukasus
DCA_1031_P_cafra_South_Africa
DCA_1406_P_cafra_South_Africa
DCA_1405_P_cafra_South_Africa
DCA_1032_P_cafra_South_Africa
AY101896_P_nivalis_Spain
AY101898_P_lanceolata_unknown
AY101877_P_alpina_unknown
AY101879_P_maritima_unknown
HQ593837_P_maritima_unknown
DCA_1397_P_maritima_Russia
AY101878_P_subulata_unknown
DCA_1399_P_subulata_Spain
DCA_1024_P_crassifolia_South_Africa
DCA_1025_P_crassifolia_South_Africa
DCA_1026_P_crassifolia_South_Africa
DCA_1027_P_crassifolia_South_Africa
DCA_1029_P_crassifolia_South_Africa
DCA_1030_P_crassifolia_South_Africa
DCA_1038_P_crassifolia_South_Africa
DCA_1396_P_crassifolia_South_Arica
AF515217_P_coronopus_England
DCA_1403_P_crassifolia_Spain
AY101881_P_crassifolia_unknown
DCA_1413_P_coronopus_South_Africa
DCA_1033_P_coronopus_South_Africa
AY101882_P_coronopus_Denmark
HQ593830_P_coronopus_unknown
HQ593832_P_coronopus_unknown
HQ593833_P_coronopus_unknown
DCA_1424_P_coronopus_Italy
DCA_1430_P_coronopus_Malta
DCA_1431_P_coronopus_Iran
DCA_1432_P_coronopus_Spain
DCA_1433_P_coronopus_Kuwait
DCA_1436_P_coronopus_Bahrain
DCA_1438_P_coronopus_Montenegro
DCA_1443_P_coronopus_Saudi_Arabia
DCA_1390_P_coronopus_Algeria
DCA_1391_P_coronopus_Algeria
DCA_1392_P_coronopus_Morocco
DCA_1395_P_coronopus_Tunisia
DCA_1097_P_coronopus_Turkey
DCA_1394_P_coronopus_Spain
DCA_1036_P_coronopus_South_Africa
DCA_1407_P_coronopus_Spain
HQ593835_P_macrorhiza_unknown
HQ593834_P_macrorhiza_unknown
AY101883_P_macrorhiza_unknown
AY101880_P_serraria_unknown
DCA_1425_P_serraria_Italy
AY101884_P_subspathulata_Portugal
1470
1471
1473
DCA_1408_P_coronopus_South_Africa
DCA_1444_P_coronopus_Iran
KF815505_P_coronopus_Saudi_Arabia
DCA_1440_P_coronopus_Portugal
DCA_1441_P_coronopus_Portugal
DCA_1401_P_crassifolia_Spain
DCA_1402_P_crassifolia_Greece
DCA_1037_P_crassifolia_South_Africa
1472
;
END;
BEGIN TREES;
TREE 1 = [&U] 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