Commit 84733c23 authored by Jannes Höpke's avatar Jannes Höpke

Upload New File

parent 34fa025b
#nexus
begin trees;
translate
1 Plantago_major,
2 Plantago_rugelii,
3 Plantago_media,
4 DCA_1031_P_cafra_South_Africa,
5 DCA_1406_P_cafra_South_Africa,
6 DCA_1405_P_cafra_South_Africa,
7 DCA_1032_P_cafra_South_Africa,
8 DCA_1402_P_crassifolia_Greece,
9 AY101952_P_lanceolata_unknown,
10 DCA_1397_P_maritima_Russia,
11 DCA_1399_P_subulata_Spain,
12 DCA_1024_P_crassifolia_South_Africa,
13 DCA_1025_P_crassifolia_South_Africa,
14 DCA_1026_P_crassifolia_South_Africa,
15 DCA_1027_P_crassifolia_South_Africa,
16 DCA_1029_P_crassifolia_South_Africa,
17 DCA_1038_P_crassifolia_South_Africa,
18 DCA_1396_P_crassifolia_South_Africa,
19 DCA_1033_P_coronopus_South_Africa,
20 DCA_1424_P_coronopus_Italy,
21 DCA_1431_P_coronopus_Iran,
22 DCA_1432_P_coronopus_Spain,
23 DCA_1433_P_coronopus_Kuwait,
24 DCA_1438_P_coronopus_Montenegro,
25 DCA_1390_P_coronopus_Algeria,
26 DCA_1391_P_coronopus_Algeria,
27 DCA_1392_P_coronpus_Morocco,
28 DCA_1395_P_coronopus_Tunisia,
29 DCA_1097_P_coronopus_Turkey,
30 DCA_1394_P_coronopus_Spain,
31 DCA_1036_P_coronopus_South_Africa,
32 DCA_1407_P_coronopus_Spain,
33 DCA_1425_P_serraria_Italy,
34 1470,
35 1471,
36 1473,
37 DCA_1422_P_crypsoides_Saudi_Arabia,
38 DCA_1403_P_crassifolia_Spain;
tree best = [&U][-3099.7052][ r 1.0467512 1.2137534 0.31570311 0.86648007 1.3557065 b 0.34424491 0.16156708 0.17876248 0.31542553 a 0.19505661 p 0.093571438 ]((4:0.00191184,(7:0.00088507,((((11:0.00501132,10:0.00254702):0.01494626,(((8:0.00000001,38:0.00108582):0.00325449,((23:0.00000001,(21:0.00000001,37:0.00000001):0.00169025):0.00168968,33:0.00178529):0.00000001):0.00982904,((20:0.00096830,(26:0.00000001,((28:0.00083686,((22:0.00000001,(32:0.00000001,(24:0.00000001,(30:0.00000001,27:0.00000001):0.00000001):0.00000001):0.00000001):0.00083477,25:0.00000001):0.00000001):0.00083477,(19:0.00000001,(31:0.00000001,(35:0.00000001,29:0.00000001):0.00000001):0.00000001):0.00083317):0.00000001):0.00000001):0.01015635,(((14:0.00000001,(((18:0.00000001,17:0.00000001):0.00000001,(13:0.00000001,15:0.00000001):0.00000001):0.00000001,16:0.00000001):0.00000001):0.00082588,(12:0.00000001,34:0.00000001):0.00166390):0.00000001,36:0.00165962):0.00183874):0.00160752):0.01098752):0.01625229,(3:0.00449744,(1:0.00253376,2:0.00339983):0.00070965):0.02345332):0.03449014,9:0.01707134):0.00630506):0.00000001):0.00088685,5:0.00000001,6:0.00000001);
end;
begin paup;
clear;
gett file=PlantagocpDNA.best.tre storebr;
lset userbr nst=6 rmat=(1.04675122 1.21375336 0.31570311 0.86648007 1.35570647) base=(0.34424491 0.16156708 0.17876248) rates=gamma shape= 0.19505661 ncat=4 pinv= 0.09357144;
end;
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